No idea - it depends what you mean by "customisation". In the best case, they will have implemented the custom code as proper Moodle plugins and will not have changed any core code. Then it's a matter of making a thorough test of the upgrade (on a copy of the live site) with your custom plugins.
However, if they have modified core code then you have a big problem. You have found out why customising core code is a VERY bad idea.
The answer to my above question will probably define your way forward.
However, if they have modified core code then you have a big problem. You have found out why customising core code is a VERY bad idea.
The answer to my above question will probably define your way forward.