The resource files for my courses have gone missing, and when I try to fix them using the "choose or upload a file" button, the resources folders are empty. However, my conf.php points to the same place as always, and when I ftp into the directory its full of the same files it always had.
Of course, it didn't happen out of no where. I have recently updated the site from 1.9 to the last 1.9.1 build from late October. I also have been trying to get moodle 2 installed in a subdomain, and as part of this, I updated php from 4 to 5.3.3. Since a bunch of our resources are actually just links to files and video already on the web, we didn't notice that the ones kept in moodle were no longer working, so I can't say for sure when the problem happened (after the 1.9.1 update, or after updating php, or after trying many unsuccessful upgrades to a duplicate db on the subdomain. I did point the moodle 2 subdomain at the same moodledata directory that the 1.9 install uses, but the file structure seems the same and I don't think the problem was there.
I also added AcceptPathInfo to my httpd.conf file and restarted apache but it didn't solve the problem either.
Is there somewhere besides config.php where the path to moodledata is specified? It seems to not even be looking in the right place.