Hi Mike,
Thanks for responding. Not sure about the other replies with issues, but I figured out what my issue was. I took a fork of the quesionnaire so that I could change how the rose display worked on feedback, changed the version number and then when it came to update to 3.9 the version that I had on my system was higher than the upgrade.php changes so it didn't go through them. I changed my version number to match and now when I upgrade it works fine.
Thanks for responding. Not sure about the other replies with issues, but I figured out what my issue was. I took a fork of the quesionnaire so that I could change how the rose display worked on feedback, changed the version number and then when it came to update to 3.9 the version that I had on my system was higher than the upgrade.php changes so it didn't go through them. I changed my version number to match and now when I upgrade it works fine.