I do use "Quick Grading" as Mary suggests.
Below is an example of what I see. Those showing "Assignment is overdue" are for students who have not upload by my due date.
In your example, you could still grade the manually turned in assignment and enter grades into the Grade textbox.
Actually, I prefer to download the grading worksheet, grade in Excel, then upload this file instead of typing in the Grade textbox, but you can do it either way.
I suggest that you eliminate the "various reasons hand in a paper copy" problems. This is 2018, not 1978.