Thank you Kent Task for taking the time to share your point of view with me,
Let me try to give more information about the situation I am facing. So, we have a private repository of moodle that we are working on. Now, all the developer that are working on it have cloned it locally and then can test it locally before they can commit and push to the private repository.
One case is that after one developer has modified the debugging message option to "developer" in moodle administration block and commit push, the other developers still have their default debugging message option even though they have made a pull request.
In my understanding, if all cloned version of the repository are using the same database they should all have the same configuration wich is not the case.
I am trying to find a solution to be able to track the admin settings too.
Thank you again for the time