Tell tale signs that site was a 1.9 ... now a 2:
* legacy file system ... is it on? (system wide) and do you see any such references in courses? A migrated 1.9 site put the entire system in legacy and at the course level (if a course was used as a template for beginning a new academic year etc. - a common practice), the course was in legacy and carried that to the new course when restored. A course developed from scratch in the 2 environment didn't have to have 'legacy' and by defaults (unless changed) wouldn't have a 'legacy' link in course admin menu.
* exploration of moodledata directory ... *might* find residual course ID directories which is how <-1.9's stored files and other items related to courses. Use of certificates was one item found on some sites - a course ID number in moodledata, inside that a moddata, inside that more numbered directories (course ID's), inside that more numbered directories (user ID's) and finally a 'Certficate.pdf' file by the same name in all directories.
Strongly suggest researching any addons/plugins/themes and their availability in the destination version.
Check installations plugins then check https://moodle.org/plugins/. Some plugins/addons don't have a 3.x compat version.
'spirit of sharing', Ken