I'm with you Becky. It's a major headache to have to change lots of intralinks when a new course is set up using a Master Course.
This was something which could be done easily in Angel (owned by Blackboard). In Angel once an intralink was put in a Master Course, it remained valid for each new class using that Master Course. Surely the Moodle gurus are as smart as those in Angel . . . . or not.